PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c5_7060V3.5.p
Common NamePHYPADRAFT_168719
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HRT-like
Protein Properties Length: 435aa    MW: 46930.6 Da    PI: 10.3088
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c5_7060V3.5.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like40.45e-13210236228
          HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                       CG+ le+G++C++ Pvkg+KRC  HK+
  Pp3c5_7060V3.5.p 210 CGAPLENGNPCNALPVKGGKRCLLHKD 236
                       **************************8 PP

2HRT-like50.53.5e-16385414130
          HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                       iCG++l dG+vC ++P ++RKRCe+HKG R
  Pp3c5_7060V3.5.p 385 ICGLRLPDGTVCADPPRPERKRCEAHKGLR 414
                       8***************************99 PP

Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSLDRGPGGD GGYMSGGSRP MSNASMDGTN SDAHSISEHH KRTSSYDQAA GIRSPSRRGP  60
RLFSEVFALG CSIAFRWSVT ENKIMAEKAE ADLIEVFDYA WKRGGNFRQR SSDVVSKIVM  120
GGALGSNDPS YDCFGVRSSR TWFFSPKSKV GVVIAARKPG IQEGCGRAGS RADRSRVADF  180
FTLFKSSSQL GGKISKSSEF TKFDIPLDRC GAPLENGNPC NALPVKGGKR CLLHKDSKKQ  240
NQGKQVKVVL TPQSSIAHHI PSSRAGSSSP ETQHHIHHAP ESPILPGPEP TSSSCFPFSI  300
APASVPSRSS PEPKRRGSLS FNSWLRTSEL RMAKSREWAE MNQAGAGNSR PDGPKRSSTY  360
SGILPTCEES QLESSVSRSP SRRDICGLRL PDGTVCADPP RPERKRCEAH KGLRNTLAPR  420
SPTHAVTPTA QESF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.144730.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001775112.10.0predicted protein
TrEMBLA9T9120.0A9T912_PHYPA; Predicted protein
STRINGPP1S186_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-18effector of transcription2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]